integrative protein signature database Search Results


molecular signatures database  (Human Protein Atlas)
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Human Protein Atlas molecular signatures database
Molecular Signatures Database, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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protein signature databases  (InterPro Inc)
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InterPro Inc protein signature databases
Protein Signature Databases, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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the integrative protein signature  (InterPro Inc)
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InterPro Inc the integrative protein signature
The sequences information of RpedOBPs and RpedCSPs.
The Integrative Protein Signature, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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protein signature database interpro v. 66.0  (InterPro Inc)
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InterPro Inc protein signature database interpro v. 66.0
The sequences information of RpedOBPs and RpedCSPs.
Protein Signature Database Interpro V. 66.0, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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database of protein sequence signatures and families  (InterPro Inc)
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InterPro Inc database of protein sequence signatures and families
The sequences information of RpedOBPs and RpedCSPs.
Database Of Protein Sequence Signatures And Families, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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integrated database of predictive protein signatures  (InterPro Inc)
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InterPro Inc integrated database of predictive protein signatures
The sequences information of RpedOBPs and RpedCSPs.
Integrated Database Of Predictive Protein Signatures, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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integrated protein signature databases  (InterPro Inc)
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InterPro Inc integrated protein signature databases
The sequences information of RpedOBPs and RpedCSPs.
Integrated Protein Signature Databases, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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101.0 protein domain signature database  (InterPro Inc)
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InterPro Inc 101.0 protein domain signature database
The sequences information of RpedOBPs and RpedCSPs.
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Image Search Results


The sequences information of RpedOBPs and RpedCSPs.

Journal: Frontiers in Physiology

Article Title: Genome-Wide Analysis of Odorant-Binding Proteins and Chemosensory Proteins in the Bean bug Riptortus pedestris

doi: 10.3389/fphys.2022.949607

Figure Lengend Snippet: The sequences information of RpedOBPs and RpedCSPs.

Article Snippet: We used the protein data of R. pedestris and blasted with different database of Nr (Non-Redundant Protein Sequence), Nt (nucleotide sequence database), UniProt (The Universal Protein Resource), KOG (Clusters of orthologous groups for eukaryotic complete genomes), eggNOG (evolutionary genealogy of genes: No-supervised Orthologous Groups), Interpro (the integrative protein signature), GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes) databases , so R. pedestris proteins were annotated based on homology (These data were derived from a previous genome paper).

Techniques: Binding Assay

The number of OBP and CSP genes in different insect species, obtained from genome (*) or antennal transcriptome (#). The digits by the histogram bars represent number of OBP and CSP genes in different hemipteran species ( Aphis gossypii , Nilaparvata lugens , Sogatella furcifera , Adelphocoris lineolatus , Adelphocoris suturalis , Nysius ericae , R. pedestris ) and phylogenetic tree was built by these hemipteran species COI genes.

Journal: Frontiers in Physiology

Article Title: Genome-Wide Analysis of Odorant-Binding Proteins and Chemosensory Proteins in the Bean bug Riptortus pedestris

doi: 10.3389/fphys.2022.949607

Figure Lengend Snippet: The number of OBP and CSP genes in different insect species, obtained from genome (*) or antennal transcriptome (#). The digits by the histogram bars represent number of OBP and CSP genes in different hemipteran species ( Aphis gossypii , Nilaparvata lugens , Sogatella furcifera , Adelphocoris lineolatus , Adelphocoris suturalis , Nysius ericae , R. pedestris ) and phylogenetic tree was built by these hemipteran species COI genes.

Article Snippet: We used the protein data of R. pedestris and blasted with different database of Nr (Non-Redundant Protein Sequence), Nt (nucleotide sequence database), UniProt (The Universal Protein Resource), KOG (Clusters of orthologous groups for eukaryotic complete genomes), eggNOG (evolutionary genealogy of genes: No-supervised Orthologous Groups), Interpro (the integrative protein signature), GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes) databases , so R. pedestris proteins were annotated based on homology (These data were derived from a previous genome paper).

Techniques:

Localization of OBPs and CSPs in the R. pedestris genome. Based on the annotation file of R. pedestris , we acquired the localization of OBP and CSP genes in genome. (A) The RpedOBPs in the R. pedestris genome, they clustered together in 4 chromosomes and one scaffold. (B) The RpedCSPs in the R. pedestris genome, they clustered together in 4 chromosomes.

Journal: Frontiers in Physiology

Article Title: Genome-Wide Analysis of Odorant-Binding Proteins and Chemosensory Proteins in the Bean bug Riptortus pedestris

doi: 10.3389/fphys.2022.949607

Figure Lengend Snippet: Localization of OBPs and CSPs in the R. pedestris genome. Based on the annotation file of R. pedestris , we acquired the localization of OBP and CSP genes in genome. (A) The RpedOBPs in the R. pedestris genome, they clustered together in 4 chromosomes and one scaffold. (B) The RpedCSPs in the R. pedestris genome, they clustered together in 4 chromosomes.

Article Snippet: We used the protein data of R. pedestris and blasted with different database of Nr (Non-Redundant Protein Sequence), Nt (nucleotide sequence database), UniProt (The Universal Protein Resource), KOG (Clusters of orthologous groups for eukaryotic complete genomes), eggNOG (evolutionary genealogy of genes: No-supervised Orthologous Groups), Interpro (the integrative protein signature), GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes) databases , so R. pedestris proteins were annotated based on homology (These data were derived from a previous genome paper).

Techniques:

Genomic structure of R. pedestris OBPs and CSPs. Based on the annotation file of R. pedestris, we acquired genomic structures of OBP and CSP genes. (A) Numbers of exon/intron and exon/intron structures of RpedOBPs. (B) Numbers of exon/intron and exon/intron structures of RpedCSPs.

Journal: Frontiers in Physiology

Article Title: Genome-Wide Analysis of Odorant-Binding Proteins and Chemosensory Proteins in the Bean bug Riptortus pedestris

doi: 10.3389/fphys.2022.949607

Figure Lengend Snippet: Genomic structure of R. pedestris OBPs and CSPs. Based on the annotation file of R. pedestris, we acquired genomic structures of OBP and CSP genes. (A) Numbers of exon/intron and exon/intron structures of RpedOBPs. (B) Numbers of exon/intron and exon/intron structures of RpedCSPs.

Article Snippet: We used the protein data of R. pedestris and blasted with different database of Nr (Non-Redundant Protein Sequence), Nt (nucleotide sequence database), UniProt (The Universal Protein Resource), KOG (Clusters of orthologous groups for eukaryotic complete genomes), eggNOG (evolutionary genealogy of genes: No-supervised Orthologous Groups), Interpro (the integrative protein signature), GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes) databases , so R. pedestris proteins were annotated based on homology (These data were derived from a previous genome paper).

Techniques:

Tissue expression profiles of R. pedestris OBPs by qRT-PCR. The relative expression level is presented as mean ± SE ( n = 3). The heatmap use Log2 and row scale based the relative expression level data. Different capital letters mean a significant difference between tissues ( p < 0.05, ANOVA, LSD). He, heads; Th, thoraxes; Ab, abdomens; Le, legs; Wi, wings; FA, female antennae; MA, male antennae.

Journal: Frontiers in Physiology

Article Title: Genome-Wide Analysis of Odorant-Binding Proteins and Chemosensory Proteins in the Bean bug Riptortus pedestris

doi: 10.3389/fphys.2022.949607

Figure Lengend Snippet: Tissue expression profiles of R. pedestris OBPs by qRT-PCR. The relative expression level is presented as mean ± SE ( n = 3). The heatmap use Log2 and row scale based the relative expression level data. Different capital letters mean a significant difference between tissues ( p < 0.05, ANOVA, LSD). He, heads; Th, thoraxes; Ab, abdomens; Le, legs; Wi, wings; FA, female antennae; MA, male antennae.

Article Snippet: We used the protein data of R. pedestris and blasted with different database of Nr (Non-Redundant Protein Sequence), Nt (nucleotide sequence database), UniProt (The Universal Protein Resource), KOG (Clusters of orthologous groups for eukaryotic complete genomes), eggNOG (evolutionary genealogy of genes: No-supervised Orthologous Groups), Interpro (the integrative protein signature), GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes) databases , so R. pedestris proteins were annotated based on homology (These data were derived from a previous genome paper).

Techniques: Expressing, Quantitative RT-PCR

Tissue expression profiles of R. pedestris CSPs by qRT-PCR. The relative expression level is presented as mean ± SE ( n = 3). The heatmap use Log2 and row scale based the relative expression level data. Different capital letters mean a significant difference between tissues ( p < 0.05, ANOVA, LSD). He, heads; Th, thoraxes; Ab, abdomens; Le, legs; Wi, wings; FA, female antennae; MA, male antennae.

Journal: Frontiers in Physiology

Article Title: Genome-Wide Analysis of Odorant-Binding Proteins and Chemosensory Proteins in the Bean bug Riptortus pedestris

doi: 10.3389/fphys.2022.949607

Figure Lengend Snippet: Tissue expression profiles of R. pedestris CSPs by qRT-PCR. The relative expression level is presented as mean ± SE ( n = 3). The heatmap use Log2 and row scale based the relative expression level data. Different capital letters mean a significant difference between tissues ( p < 0.05, ANOVA, LSD). He, heads; Th, thoraxes; Ab, abdomens; Le, legs; Wi, wings; FA, female antennae; MA, male antennae.

Article Snippet: We used the protein data of R. pedestris and blasted with different database of Nr (Non-Redundant Protein Sequence), Nt (nucleotide sequence database), UniProt (The Universal Protein Resource), KOG (Clusters of orthologous groups for eukaryotic complete genomes), eggNOG (evolutionary genealogy of genes: No-supervised Orthologous Groups), Interpro (the integrative protein signature), GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes) databases , so R. pedestris proteins were annotated based on homology (These data were derived from a previous genome paper).

Techniques: Expressing, Quantitative RT-PCR